CRAN Package Check Results for Package lisat

Last updated on 2026-04-05 14:50:19 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.2	48.61	574.10	622.71	OK
r-devel-linux-x86_64-debian-gcc	0.1.2	38.67	402.97	441.64	OK
r-devel-linux-x86_64-fedora-clang	0.1.2	84.00	942.61	1026.61	OK
r-devel-linux-x86_64-fedora-gcc	0.1.2	68.00	749.28	817.28	OK
r-devel-macos-arm64	0.1.2	14.00	146.00	160.00	OK
r-devel-windows-x86_64	0.1.2	49.00	470.00	519.00	OK
r-patched-linux-x86_64	0.1.2	42.81	554.48	597.29	OK
r-release-linux-x86_64	0.1.2	43.02	551.43	594.45	OK
r-release-macos-arm64	0.1.2	14.00	100.00	114.00	ERROR
r-release-macos-x86_64	0.1.2	33.00	240.00	273.00	ERROR
r-release-windows-x86_64	0.1.2	53.00	446.00	499.00	OK
r-oldrel-macos-x86_64	0.1.2	34.00	289.00	323.00	ERROR
r-oldrel-windows-x86_64	0.1.2	67.00	629.00	696.00	OK

Check Details

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [4s/4s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-release-macos-arm64

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘lisat-intro.Rmd’ using rmarkdown Quitting from lisat-intro.Rmd:107-111 [cis_analysis] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.frame`: ! undefined columns selected --- Backtrace: ▆ 1. └─lisat::CIS(IS_raw = IS_raw, connect_distance = 50000) 2. ├─IS_raw[, c("Locus", "Chr", "nearest_gene_name")] 3. └─base::`[.data.frame`(IS_raw, , c("Locus", "Chr", "nearest_gene_name")) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'lisat-intro.Rmd' failed with diagnostics: undefined columns selected --- failed re-building ‘lisat-intro.Rmd’ SUMMARY: processing the following file failed: ‘lisat-intro.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [9s/9s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-release-macos-x86_64

Version: 0.1.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg38.knownGene’ Flavor: r-oldrel-macos-x86_64

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [11s/12s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(lisat) > testthat::test_check("lisat") Saving _problems/test-functions-71.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ──────── Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it. Backtrace: ▆ 1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64