CRAN Package Check Results for Package faersquarterlydata

Last updated on 2026-02-08 17:49:47 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.2.0	5.60	107.48	113.08	ERROR
r-devel-linux-x86_64-debian-gcc	1.2.0	2.98	77.11	80.09	ERROR
r-devel-linux-x86_64-fedora-clang	1.2.0	10.00	162.70	172.70	ERROR
r-devel-linux-x86_64-fedora-gcc	1.2.0	10.00	166.09	176.09	ERROR
r-devel-windows-x86_64	1.2.0	9.00	107.00	116.00	ERROR
r-patched-linux-x86_64	1.2.0	6.36	100.32	106.68	ERROR
r-release-linux-x86_64	1.2.0	4.92	100.56	105.48	ERROR
r-release-macos-arm64	1.2.0				OK
r-release-macos-x86_64	1.2.0	4.00	112.00	116.00	OK
r-release-windows-x86_64	1.2.0	8.00	108.00	116.00	OK
r-oldrel-macos-arm64	1.2.0				OK
r-oldrel-macos-x86_64	1.2.0	4.00	156.00	160.00	OK
r-oldrel-windows-x86_64	1.2.0	10.00	148.00	158.00	ERROR

Check Details

Version: 1.2.0
Check: examples
Result: ERROR Running examples in ‘faersquarterlydata-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: unify_tabular_ascii > ### Title: Unify the list to a tabular format > ### Aliases: unify_tabular_ascii > > ### ** Examples > > unify_tabular_ascii(ascii_list = als_faers_data) Error in `summarise()`: ℹ In argument: `indi_pt_ps = sort(unique(indi_pt))`. ℹ In group 79: `primaryid = 129433992`, `caseid = 12943399`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. ℹ To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = als_faers_data) 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed summary_faersdata 5.077 0.275 7.53 Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [55s/69s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(faersquarterlydata) > > test_check("faersquarterlydata") Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-read_func_ascii-51.R retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata 1 out of 1 retrieving resources/1_ADR22Q1_example.xml Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-ror-23.R Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-summary-4.R unzipping resources/xml_files/faers_xml_2012q4.zip unzipping resources/ascii_files//faers_ascii_2022Q4.zip [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-read_func_ascii.R:51:3'): unify_tabular_ascii ────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-read_func_ascii.R:51:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-ror.R:23:3'): estimate_ror_bygroup ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-ror.R:23:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-summary.R:4:3'): summary_faersdata ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-summary.R:4:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.0
Check: examples
Result: ERROR Running examples in ‘faersquarterlydata-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: unify_tabular_ascii > ### Title: Unify the list to a tabular format > ### Aliases: unify_tabular_ascii > > ### ** Examples > > unify_tabular_ascii(ascii_list = als_faers_data) Error in `summarise()`: ℹ In argument: `indi_pt_ps = sort(unique(indi_pt))`. ℹ In group 79: `primaryid = 129433992`, `caseid = 12943399`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. ℹ To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = als_faers_data) 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed summary_faersdata 3.345 0.16 5.031 Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [40s/43s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(faersquarterlydata) > > test_check("faersquarterlydata") Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-read_func_ascii-51.R retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata 1 out of 1 retrieving resources/1_ADR22Q1_example.xml Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-ror-23.R Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-summary-4.R unzipping resources/xml_files/faers_xml_2012q4.zip unzipping resources/ascii_files//faers_ascii_2022Q4.zip [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-read_func_ascii.R:51:3'): unify_tabular_ascii ────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-read_func_ascii.R:51:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-ror.R:23:3'): estimate_ror_bygroup ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-ror.R:23:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-summary.R:4:3'): summary_faersdata ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-summary.R:4:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.0
Check: examples
Result: ERROR Running examples in ‘faersquarterlydata-Ex.R’ failed The error most likely occurred in: > ### Name: unify_tabular_ascii > ### Title: Unify the list to a tabular format > ### Aliases: unify_tabular_ascii > > ### ** Examples > > unify_tabular_ascii(ascii_list = als_faers_data) Error in `summarise()`: ℹ In argument: `indi_pt_ps = sort(unique(indi_pt))`. ℹ In group 79: `primaryid = 129433992`, `caseid = 12943399`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. ℹ To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = als_faers_data) 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-windows-x86_64

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [84s/99s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(faersquarterlydata) > > test_check("faersquarterlydata") Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-read_func_ascii-51.R retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata 1 out of 1 retrieving resources/1_ADR22Q1_example.xml Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-ror-23.R Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-summary-4.R unzipping resources/xml_files/faers_xml_2012q4.zip unzipping resources/ascii_files//faers_ascii_2022Q4.zip [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-read_func_ascii.R:51:3'): unify_tabular_ascii ────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-read_func_ascii.R:51:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-ror.R:23:3'): estimate_ror_bygroup ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-ror.R:23:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-summary.R:4:3'): summary_faersdata ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-summary.R:4:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [87s/258s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(faersquarterlydata) > > test_check("faersquarterlydata") Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-read_func_ascii-51.R retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata 1 out of 1 retrieving resources/1_ADR22Q1_example.xml Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-ror-23.R Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-summary-4.R unzipping resources/xml_files/faers_xml_2012q4.zip unzipping resources/ascii_files//faers_ascii_2022Q4.zip [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-read_func_ascii.R:51:3'): unify_tabular_ascii ────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-read_func_ascii.R:51:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-ror.R:23:3'): estimate_ror_bygroup ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-ror.R:23:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-summary.R:4:3'): summary_faersdata ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-summary.R:4:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.2.0
Check: tests
Result: ERROR Running 'testthat.R' [43s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(faersquarterlydata) > > test_check("faersquarterlydata") Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-read_func_ascii-51.R retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata 1 out of 1 retrieving resources/1_ADR22Q1_example.xml Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-ror-23.R Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-summary-4.R unzipping resources/xml_files/faers_xml_2012q4.zip unzipping resources/ascii_files/faers_ascii_2022Q4.zip [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-read_func_ascii.R:51:3'): unify_tabular_ascii ────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-read_func_ascii.R:51:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-ror.R:23:3'): estimate_ror_bygroup ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-ror.R:23:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-summary.R:4:3'): summary_faersdata ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-summary.R:4:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [53s/70s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(faersquarterlydata) > > test_check("faersquarterlydata") Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-read_func_ascii-51.R retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata 1 out of 1 retrieving resources/1_ADR22Q1_example.xml Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-ror-23.R Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-summary-4.R unzipping resources/xml_files/faers_xml_2012q4.zip unzipping resources/ascii_files//faers_ascii_2022Q4.zip [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-read_func_ascii.R:51:3'): unify_tabular_ascii ────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-read_func_ascii.R:51:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-ror.R:23:3'): estimate_ror_bygroup ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-ror.R:23:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-summary.R:4:3'): summary_faersdata ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-summary.R:4:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [54s/69s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(faersquarterlydata) > > test_check("faersquarterlydata") Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-read_func_ascii-51.R retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata 1 out of 1 retrieving resources/1_ADR22Q1_example.xml Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-ror-23.R Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-summary-4.R unzipping resources/xml_files/faers_xml_2012q4.zip unzipping resources/ascii_files//faers_ascii_2022Q4.zip [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-read_func_ascii.R:51:3'): unify_tabular_ascii ────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-read_func_ascii.R:51:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-ror.R:23:3'): estimate_ror_bygroup ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-ror.R:23:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-summary.R:4:3'): summary_faersdata ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-summary.R:4:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

Version: 1.2.0
Check: tests
Result: ERROR Running 'testthat.R' [68s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(faersquarterlydata) > > test_check("faersquarterlydata") Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 saving resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 saving resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 saving resources/test_zip_ex_dir/ASCII/INDI22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 saving resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 saving resources/test_zip_ex_dir/ASCII/REAC22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 saving resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt into cache: resources/cache/cache_test.rdata binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 saving resources/test_zip_ex_dir/ASCII/THER22Q4.txt into cache: resources/cache/cache_test.rdata Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-read_func_ascii-51.R retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata 1 out of 1 retrieving resources/1_ADR22Q1_example.xml Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-ror-23.R Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 2 out of 2 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4.txt 1 out of 8 binding resources/test_zip_ex_dir/ASCII/DEMO22Q4_test.txt 2 out of 8 binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 3 out of 8 binding resources/test_zip_ex_dir/ASCII/INDI22Q4.txt 4 out of 8 binding resources/test_zip_ex_dir/ASCII/OUTC22Q4.txt 5 out of 8 binding resources/test_zip_ex_dir/ASCII/REAC22Q4.txt 6 out of 8 binding resources/test_zip_ex_dir/ASCII/RPSR22Q4.txt 7 out of 8 binding resources/test_zip_ex_dir/ASCII/THER22Q4.txt 8 out of 8 Saving _problems/test-summary-4.R unzipping resources/xml_files/faers_xml_2012q4.zip unzipping resources/ascii_files/faers_ascii_2022Q4.zip [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-read_func_ascii.R:51:3'): unify_tabular_ascii ────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-read_func_ascii.R:51:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-ror.R:23:3'): estimate_ror_bygroup ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-ror.R:23:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-summary.R:4:3'): summary_faersdata ───────────────────────────── Error in `summarise(., indi_pt_ps = sort(unique(indi_pt)), drugname_ps = paste(sort(unique(drugname)), collapse = " + "), start_dt_ps = unique(start_dt), .groups = "keep")`: i In argument: `indi_pt_ps = sort(unique(indi_pt))`. i In group 1: `primaryid = 100115733`, `caseid = 10011573`. Caused by error: ! `indi_pt_ps` must be size 1, not 0. i To return more or less than 1 row per group, use `reframe()`. Backtrace: ▆ 1. ├─faersquarterlydata::unify_tabular_ascii(ascii_list = faers_ascii_data) at test-summary.R:4:3 2. │ └─... %>% relocate(age_YR, .after = "age") 3. ├─dplyr::relocate(., age_YR, .after = "age") 4. ├─dplyr::mutate(...) 5. ├─dplyr::left_join(...) 6. ├─dplyr:::left_join.data.frame(...) 7. │ └─dplyr::auto_copy(x, y, copy = copy) 8. │ ├─dplyr::same_src(x, y) 9. │ └─dplyr:::same_src.data.frame(x, y) 10. │ └─base::is.data.frame(y) 11. ├─... %>% suppressWarnings() 12. ├─base::suppressWarnings(.) 13. │ └─base::withCallingHandlers(...) 14. ├─dplyr::ungroup(.) 15. ├─dplyr::summarise(...) 16. ├─dplyr:::summarise.grouped_df(...) 17. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise") 18. │ └─base::withCallingHandlers(...) 19. ├─dplyr:::dplyr_internal_error(...) 20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data) 21. │ └─rlang:::signal_abort(cnd, .file) 22. │ └─base::signalCondition(cnd) 23. └─dplyr (local) `<fn>`(`<dpl:::__>`) 24. └─dplyr (local) handler(cnd) 25. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) [ FAIL 3 | WARN 36 | SKIP 0 | PASS 37 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64

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