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Last updated on 2026-09-27 17:53:37 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 1.48 | 97.13 | 98.61 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 1.44 | 68.98 | 70.42 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 27.27 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 68.93 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.1 | 3.00 | 114.00 | 117.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.1 | 1.69 | 88.75 | 90.44 | ERROR | |
| r-release-linux-x86_64 | 1.0.1 | 1.64 | 89.53 | 91.17 | ERROR | |
| r-release-macos-arm64 | 1.0.1 | 1.00 | 51.00 | 52.00 | OK | |
| r-release-macos-x86_64 | 1.0.1 | 2.00 | 120.00 | 122.00 | OK | |
| r-release-windows-x86_64 | 1.0.1 | 4.00 | 99.00 | 103.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 1.00 | 40.00 | 41.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.1 | 1.00 | 135.00 | 136.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.1 | 3.00 | 131.00 | 134.00 | ERROR |
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bridging_cross-product.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘bridging_cross-product.Rmd’
--- re-building ‘bridging_introduction.Rmd’ using rmarkdown
Quitting from bridging_introduction.Rmd:926-936 [pca2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `OlinkAnalyze::olink_pca_plot()`:
! Duplicate SampleID(s) detected: "A13", "A29", "A30", "A36", "A45",
"A46", "A52", "A63", "A71", "A73", "B3", "B37", "B4", "B45", "B63", "B75",
"CONTROL_SAMPLE_AS 1_CAM1", "CONTROL_SAMPLE_AS 1_CAM2", …, "CONTROL_SAMPLE_AS
2_INFI13", and "CONTROL_SAMPLE_AS 2_INFI14". Each sample ID must be unique.
Please check your data and ensure that each sample has a unique identifier.
---
Backtrace:
▆
1. └─OlinkAnalyze::olink_pca_plot(df = npx_df_br_no_ctrl, color_g = "Type", byPanel = TRUE, check_log = check_log_npx_df_br_no_ctrl)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bridging_introduction.Rmd' failed with diagnostics:
Duplicate SampleID(s) detected: "A13", "A29", "A30", "A36", "A45",
"A46", "A52", "A63", "A71", "A73", "B3", "B37", "B4", "B45", "B63", "B75",
"CONTROL_SAMPLE_AS 1_CAM1", "CONTROL_SAMPLE_AS 1_CAM2", …, "CONTROL_SAMPLE_AS
2_INFI13", and "CONTROL_SAMPLE_AS 2_INFI14". Each sample ID must be unique.
Please check your data and ensure that each sample has a unique identifier.
--- failed re-building ‘bridging_introduction.Rmd’
--- re-building ‘lod.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘lod.Rmd’
--- re-building ‘outlier_exclusion.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘outlier_exclusion.Rmd’
--- re-building ‘plate_randomizer.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘plate_randomizer.Rmd’
SUMMARY: processing the following file failed:
‘bridging_introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘bridging_cross-product.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘bridging_cross-product.Rmd’
--- re-building ‘bridging_introduction.Rmd’ using rmarkdown
Quitting from bridging_introduction.Rmd:154-174 [preprocessing]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'OlinkAnalyze'
---
Backtrace:
▆
1. └─base::loadNamespace(x)
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bridging_introduction.Rmd' failed with diagnostics:
there is no package called 'OlinkAnalyze'
--- failed re-building ‘bridging_introduction.Rmd’
--- re-building ‘lod.Rmd’ using rmarkdown
Quitting from lod.Rmd:83-177 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'OlinkAnalyze'
---
Backtrace:
▆
1. └─base::loadNamespace(x)
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'lod.Rmd' failed with diagnostics:
there is no package called 'OlinkAnalyze'
--- failed re-building ‘lod.Rmd’
--- re-building ‘outlier_exclusion.Rmd’ using rmarkdown
Quitting from outlier_exclusion.Rmd:37-87 [Outlier_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'OlinkAnalyze'
---
Backtrace:
▆
1. └─base::loadNamespace(x)
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'outlier_exclusion.Rmd' failed with diagnostics:
there is no package called 'OlinkAnalyze'
--- failed re-building ‘outlier_exclusion.Rmd’
--- re-building ‘plate_randomizer.Rmd’ using rmarkdown
Quitting from plate_randomizer.Rmd:53-68 [manifest]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'OlinkAnalyze'
---
Backtrace:
▆
1. ├─knitr::kable(...)
2. ├─dplyr::slice_head(OlinkAnalyze::manifest, n = 10L)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'plate_randomizer.Rmd' failed with diagnostics:
there is no package called 'OlinkAnalyze'
--- failed re-building ‘plate_randomizer.Rmd’
SUMMARY: processing the following files failed:
‘bridging_introduction.Rmd’ ‘lod.Rmd’ ‘outlier_exclusion.Rmd’
‘plate_randomizer.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘bridging_cross-product.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘bridging_cross-product.Rmd’
--- re-building ‘bridging_introduction.Rmd’ using rmarkdown
Quitting from bridging_introduction.Rmd:926-936 [pca2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `OlinkAnalyze::olink_pca_plot()`:
! Duplicate SampleID(s) detected: "A13", "A29", "A30", "A36", "A45",
"A46", "A52", "A63", "A71", "A73", "B3", "B37", "B4", "B45", "B63", "B75",
"CONTROL_SAMPLE_AS 1_CAM1", "CONTROL_SAMPLE_AS 1_CAM2", …, "CONTROL_SAMPLE_AS
2_INFI13", and "CONTROL_SAMPLE_AS 2_INFI14". Each sample ID must be unique.
Please check your data and ensure that each sample has a unique identifier.
---
Backtrace:
▆
1. └─OlinkAnalyze::olink_pca_plot(df = npx_df_br_no_ctrl, color_g = "Type", byPanel = TRUE, check_log = check_log_npx_df_br_no_ctrl)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bridging_introduction.Rmd' failed with diagnostics:
Duplicate SampleID(s) detected: "A13", "A29", "A30", "A36", "A45",
"A46", "A52", "A63", "A71", "A73", "B3", "B37", "B4", "B45", "B63", "B75",
"CONTROL_SAMPLE_AS 1_CAM1", "CONTROL_SAMPLE_AS 1_CAM2", …, "CONTROL_SAMPLE_AS
2_INFI13", and "CONTROL_SAMPLE_AS 2_INFI14". Each sample ID must be unique.
Please check your data and ensure that each sample has a unique identifier.
--- failed re-building ‘bridging_introduction.Rmd’
--- re-building ‘lod.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘lod.Rmd’
--- re-building ‘outlier_exclusion.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘outlier_exclusion.Rmd’
--- re-building ‘plate_randomizer.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘plate_randomizer.Rmd’
SUMMARY: processing the following file failed:
‘bridging_introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'bridging_cross-product.Rmd' using rmarkdown
--- finished re-building 'bridging_cross-product.Rmd'
--- re-building 'bridging_introduction.Rmd' using rmarkdown
Quitting from bridging_introduction.Rmd:926-936 [pca2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `OlinkAnalyze::olink_pca_plot()`:
! Duplicate SampleID(s) detected: "A13", "A29", "A30", "A36", "A45",
"A46", "A52", "A63", "A71", "A73", "B3", "B37", "B4", "B45", "B63", "B75",
"CONTROL_SAMPLE_AS 1_CAM1", "CONTROL_SAMPLE_AS 1_CAM2", …, "CONTROL_SAMPLE_AS
2_INFI13", and "CONTROL_SAMPLE_AS 2_INFI14". Each sample ID must be unique.
Please check your data and ensure that each sample has a unique identifier.
---
Backtrace:
▆
1. └─OlinkAnalyze::olink_pca_plot(df = npx_df_br_no_ctrl, color_g = "Type", byPanel = TRUE, check_log = check_log_npx_df_br_no_ctrl)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bridging_introduction.Rmd' failed with diagnostics:
Duplicate SampleID(s) detected: "A13", "A29", "A30", "A36", "A45",
"A46", "A52", "A63", "A71", "A73", "B3", "B37", "B4", "B45", "B63", "B75",
"CONTROL_SAMPLE_AS 1_CAM1", "CONTROL_SAMPLE_AS 1_CAM2", …, "CONTROL_SAMPLE_AS
2_INFI13", and "CONTROL_SAMPLE_AS 2_INFI14". Each sample ID must be unique.
Please check your data and ensure that each sample has a unique identifier.
--- failed re-building 'bridging_introduction.Rmd'
--- re-building 'lod.Rmd' using rmarkdown
--- finished re-building 'lod.Rmd'
--- re-building 'outlier_exclusion.Rmd' using rmarkdown
--- finished re-building 'outlier_exclusion.Rmd'
--- re-building 'plate_randomizer.Rmd' using rmarkdown
--- finished re-building 'plate_randomizer.Rmd'
SUMMARY: processing the following file failed:
'bridging_introduction.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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