Last updated on 2024-05-18 11:51:14 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.7 | 105.14 | 344.08 | 449.22 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.1.7 | 88.55 | 258.17 | 346.72 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.1.7 | 617.61 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.7 | 629.17 | NOTE | |||
| r-devel-windows-x86_64 | 2.1.7 | 94.00 | 275.00 | 369.00 | NOTE | |
| r-patched-linux-x86_64 | 2.1.7 | 94.78 | 314.39 | 409.17 | ERROR | |
| r-release-linux-x86_64 | 2.1.7 | 94.97 | 338.59 | 433.56 | NOTE | |
| r-release-macos-arm64 | 2.1.7 | 137.00 | NOTE | |||
| r-release-windows-x86_64 | 2.1.7 | 100.00 | 280.00 | 380.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.1.7 | 159.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.1.7 | 283.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.1.7 | 119.00 | 341.00 | 460.00 | ERROR |
Version: 2.1.7
Check: C++ specification
Result: NOTE
Specified C++14: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.1.7
Check: Rd files
Result: NOTE
checkRd: (-1) simulate_admixture.Rd:36: Lost braces
36 | \code{location}{ location of the marker under selection (in Morgan) }
| ^
checkRd: (-1) simulate_ancestry.Rd:49: Lost braces
49 | \code{location}{ location of the marker under selection (in Morgan) }
| ^
checkRd: (-1) simulate_ancestry_migration.Rd:59: Lost braces
59 | \code{location}{ location of the marker under selection (in Morgan) }
| ^
checkRd: (-1) simulate_sequence.Rd:51: Lost braces
51 | \code{location}{ location of the marker under selection (in Morgan) }
| ^
checkRd: (-1) simulate_sequence_migration.Rd:58: Lost braces
58 | \code{location}{ location of the marker under selection (in Morgan) }
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 2.1.7
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘methods’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.1.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [106s/124s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GenomeAdmixR) # nolint
>
> test_check("GenomeAdmixR")
|
| | 0%
|
|=================================== | 50%
|
|======================================================================| 100%[ FAIL 1 | WARN 0 | SKIP 0 | PASS 454 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-simulate_admixture_until.R:24:3'): simulate_admixture_until ──
fst_2 >= 0.01 is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 454 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 2.1.7
Check: installed package size
Result: NOTE
installed size is 6.6Mb
sub-directories of 1Mb or more:
doc 2.0Mb
libs 4.0Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.1.7
Check: tests
Result: ERROR
Running 'testthat.R' [116s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GenomeAdmixR) # nolint
>
> test_check("GenomeAdmixR")
|
| | 0%
|
|=================================== | 50%
|
|======================================================================| 100%[ FAIL 1 | WARN 0 | SKIP 0 | PASS 454 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-simulate_admixture_data.R:202:3'): simulate_admixture_data_recombination_map ──
`all_j` not equal to `expected_num_j`.
1/1 mismatches
[1] 70 - 100 == -30
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 454 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
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