f479562d2ae95b12a50af878132cc809 *DESCRIPTION
147e2492725b0cf180e481b77e4416a0 *NAMESPACE
b63050fd9a138b9dab15d215799e28ef *NEWS.md
da5aefe1112e03c8fbe91ff12b4ef43a *R/RcppExports.R
35b4f52f24d31eaed678280235cfd059 *R/data.R
c5c2a77768eb5c6a48360f8f0c984ccc *R/initialization_diagnostics.R
2dc482596a3138fac33e01140c7cc7db *R/mcmc.R
1a5e6a0a9af1dacd332230ffea496312 *R/moire-package.R
8eb3d23035a416627bc3d9cb7e64cff2 *R/simulator.R
b7cfb6d9747c17a37a21780469401280 *R/summary.R
395410169a3dbd119e7cf3ec7a7fb0d9 *R/utils.R
224cc0f8c9c4c8e2fc1b405bdb43e1b4 *README.md
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
096b0a21d9bfe8178ab2f63583f87b6e *build/vignette.rds
f64e1bbafd7b614db2edcb6d54c71ff0 *data/mcmc_results.rda
96be35da23ee138fd8e63a4558ec1b73 *data/namibia_data.rda
cf4045404b7354022fa1071f9d3242be *data/regional_allele_frequencies.rda
1594caf06dde00bce56846ef93f01ad4 *data/simulated_data.rda
c8fb3340aa1eba9e3a527706b263d22d *inst/CITATION
26739152a87f32b11633a8a4896d32f4 *inst/doc/mcmc_demo.R
58f088f0d7a97c0aa0737c7aa49da865 *inst/doc/mcmc_demo.Rmd
09c9197f8adcc5a610d71b025710a4fe *inst/doc/mcmc_demo.html
4ae24c7d2076a71e1a786c92e20a44a7 *inst/doc/namibia.R
eb7945f56396fac1e532d29f020da6df *inst/doc/namibia.Rmd
7b1f0f2bd450abfdba906b7b3c21ec1d *inst/doc/namibia.html
306d5f7df089ed9b296c46c4c1e7730c *man/calculate_he.Rd
6943404db88ef15d50eba3521acf9c2f *man/calculate_med_allele_freqs.Rd
e5e6ca94fb7ab889a1fcc08caf259116 *man/calculate_naive_allele_frequencies.Rd
dce068e84fc95ed56517d4d8c70669b8 *man/calculate_naive_coi.Rd
b8619d455ba9f262929ca1f660d8537f *man/calculate_naive_coi_offset.Rd
f93313f872facad814788062a93c81fb *man/figures/logo.svg
c5778c536a6fc27d90e0ab149e9abfe0 *man/figures/moire_web_logo.png
f4daaf4a2ae9efa4bbaf4c31ebc2621c *man/figures/moire_web_logo.svg
ba3f683e5e00b552ba4e150131bf6f8c *man/load_delimited_data.Rd
ab00037e84064a922f5f609b7a78eb16 *man/load_long_form_data.Rd
4deab08f2ab3121bacb94df90e3a0155 *man/mcmc_results.Rd
5f62312d69fa5de061fc3cdfdeee5351 *man/namibia_data.Rd
9cc9f54c59cb8be9cb89d519d5e98be4 *man/plot_chain_swaps.Rd
269f796d73d9f7bb65351d4c1ad239d3 *man/rdirichlet.Rd
e1214f6a2251dd7653c8af795e01accf *man/regional_allele_frequencies.Rd
2ca2bab636d7dee0e31a018ecee69906 *man/run_mcmc.Rd
99ae4eafc9c1ec5c1ff8208146aeee8e *man/simulate_allele_frequencies.Rd
2a836ddef1d7f2c5e370d4205dae7143 *man/simulate_data.Rd
f9dff09d36f247ca1fba761c7dd0dcf5 *man/simulate_observed_allele.Rd
3415a17fa234d016c8922f1d61c0d5c2 *man/simulate_observed_genotype.Rd
6ce2e22503e2913009315ba427c74444 *man/simulate_sample_coi.Rd
888e5e002e36c040b38c84e9bff645b6 *man/simulate_sample_genotype.Rd
77866f96b2e52da4e51e033069f1b5b9 *man/simulated_data.Rd
1afb99aebd064fd9eb479614eb6deba9 *man/summarize_allele_freq_fn.Rd
7345efa9985219023423efd6397347ce *man/summarize_allele_freqs.Rd
4750a1c73789cf757d72180dfafc95b0 *man/summarize_coi.Rd
1e53bc67031e8e20aefb631d033c2bed *man/summarize_effective_coi.Rd
9f691c906c051193c018ae3c42d4a8d8 *man/summarize_epsilon_neg.Rd
a37868561446c15c2144eaa1d4e3fa80 *man/summarize_epsilon_pos.Rd
1570499d9d3d1b4dfdc347ab3c018852 *man/summarize_he.Rd
aa979140d5e96027eac910f44ace3888 *man/summarize_relatedness.Rd
2e1a5dc1a92051dac5a890050326bd95 *src/Makevars
5bb30a826b45767dc66c4b30ec706440 *src/Makevars.win
118a66c5a5de7f3816fb134c59f756b4 *src/RcppExports.cpp
5f7b42ab3e1701eb935dab99be8da66b *src/chain.cpp
e8a8042859bced478130faebde8176c4 *src/chain.h
81fbf446db2ade2dee59b1b8fdade650 *src/combination_indices_generator.cpp
2a1b4049a2f1fa4bd416b0fde01bcee0 *src/combination_indices_generator.h
d88f5ccb70eecf9f71fb21adf0d71a72 *src/genotyping_data.cpp
95c415f7c723d431a6d449e79b079f71 *src/genotyping_data.h
e5e1744a9323f85a93e62e0ce2a84955 *src/initialization_diagnostics.h
afd284159df589c4b24b7230e4ded25c *src/main.cpp
e1c6beec3731f0f7cb70ba5c3dfa12f1 *src/main.h
077e5886d98ca5dfc3249cc497a6b37c *src/mcmc.cpp
0b887a8fcb33a15b917c584a246d81c8 *src/mcmc.h
19883f3ac3d2edfe95cc7f19945d4c5f *src/mcmc_progress_bar.cpp
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c0f3fac7bef0d1ed6edc92822950ff45 *src/mcmc_utils.cpp
15ea2a230b40fd7ebce0f22e93572322 *src/mcmc_utils.h
4c9e44ca8a21197a75987a68270ab43d *src/monotone_interpolator.h
c9c242ad650f2ea71fa67ac7f14fab62 *src/parameters.cpp
f7a038676c3ea8360c96d7caeabda458 *src/parameters.h
ad1e169f2ee46a7e52ae964f4e471f4e *src/prob_any_missing.cpp
5518a886516b6eaea75176b26cc89d13 *src/prob_any_missing.h
4a2d8825f1de9dda31c555f0d718be21 *src/profiler.cpp
202877bd89fa30817c8880376561495e *src/sampler.cpp
c059c083fd0c348a4f9d0a8b14c09606 *src/sampler.h
c7c8a0eaf6ae5a6e873680022b28f5cc *src/seed.h
11f32bba15885c75dfc8b45c8212369f *src/timer.h
dd4e52bfee84c64c1fca324f94071c6c *tests/testthat.R
30c5f8021369857944ab4477edd24738 *tests/testthat/test-adapt-temp.R
be076d97b2f83202f772b8a7dfb56d2d *tests/testthat/test-initialization-diagnostics.R
1da1865e9f46504b3aba47966f8691a8 *tests/testthat/test-seed.R
a5e9f02e9b24859637dedfec73d0c9c1 *tests/testthat/test-utils.R
3f9e2f5ba22e4ca69c48fef28ccdb246 *vignettes/ecoi_marginal_demo.html
58f088f0d7a97c0aa0737c7aa49da865 *vignettes/mcmc_demo.Rmd
eb7945f56396fac1e532d29f020da6df *vignettes/namibia.Rmd
