9b74571878aa40411264c2c6aed10d9e *DESCRIPTION
9c4f34fbd65620c5155d5d836049317f *LICENSE
337be0e08f0f6c9ad64b8422e7b6917b *NAMESPACE
cbbf400031d5878f519e10b4d58c130e *NEWS.md
2196e6a6d267213170defc7895857d61 *R/RcppExports.R
10eb53d66235ee5a59f9bcf08632475d *R/aaa_utils.R
09df77c8cbe9bb05af8b977f175ccc61 *R/csx.R
2270e85d3c9f8c7b809471c955449ed4 *R/deconv_method.R
c86772401b56e1b19875c701ee87f243 *R/dicepro-package.R
11a0b7b48747968fe87cb8709bfdfd13 *R/dicepro.R
d99bb935bda6fc42e4d5a33c4ae991b1 *R/heatmap_error.R
d5d61f9ce758235c78d47ed62df4aa1e *R/hyperopt_selection.R
45e0ddd26f92054a9a235dcf5ed52406 *R/hypersearch.R
b4883263c6f0dec13f67da79db36f8d4 *R/lambda_gamma_initialize.R
1aa2a4f82f009e8924f509a896275242 *R/metrics.R
11642ecc89aa131fc01e10ccb78e03d7 *R/nmf_optim.R
ff0173a409d830a25c886eaee3c580b9 *R/optimization.R
d06197c5fa117868f9c03bcbf0c86480 *R/plot_dicepro.R
27d21e69fd693f40d548f84a4587651d *R/real_dataset.R
d568f3ebcc329a85dd2b69f487c0240c *R/simulation.R
6bb6f9839206a5cecb708677a9fa3140 *R/zzz.R
b1178938535f600d7f1a9a1845394bc6 *README.md
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
82a18effa39dd7208adc858075766d54 *build/vignette.rds
ce422c644739720eebb42d54d3532aa2 *data/BlueCode.rda
a3e78c6f47cdb225ebfc87fc714d7f18 *data/CellMixtures.rda
72a6992264dfb34caa9f26f86f958c9c *inst/WORDLIST
329271869cf3bdbc87922c0b905f2b05 *inst/doc/hyperparameter-space.R
a6aa14f7075cd2d911470a6fbb50ba4d *inst/doc/hyperparameter-space.Rmd
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61bcc3edbcc02d16afb74505562f11b2 *inst/doc/vignette-real-data.R
4b0c2c578d93197a6dd1ad9942f12d61 *inst/doc/vignette-real-data.Rmd
c9dc9b1c71879155549d6adfe5a71dfd *inst/doc/vignette-real-data.html
b1025625c4a50af8b8d345a4b9c6f7ba *inst/doc/vignette-simulation.R
2c83748f909c4aaeea24c2376eb0b1ad *inst/doc/vignette-simulation.Rmd
5eadc6b43e8ca4b9ccacaa0c8e92e34b *inst/doc/vignette-simulation.html
58ac8aaf440232088489ccb8ddea1c5e *man/BlueCode.Rd
af7f3acca8b9be31ee0f777e8393247a *man/CellMixtures.Rd
392666319517a5092fea43c647d4064e *man/best_hyperParams.Rd
5733ac29769ce6b37a83c7373005b1ac *man/contains_nan_or_inf.Rd
b2819d568598b4011822dffd1ddf03a5 *man/create_gamma_lambda_plot.Rd
c988e7c15db0ee8ecd0abbcbe98e5ed3 *man/dicepro-package.Rd
fc4e00fce9eb3745d5dded593ce3f580 *man/dicepro.Rd
2eba69f8caa1368b6275b62b8d65362c *man/full_metrics.Rd
9d402b5d76436f8e15548770e44a0bb7 *man/generateProp.Rd
89eff2428f18d7b25f7a6e36c981aa5e *man/generate_ref_matrix.Rd
220af212017e674c677f1f349fd7107a *man/heatmap_abundances.Rd
42fc2a2507eef95cfedfdb73c36b5dcf *man/makeTable1Tool.Rd
b151e0ec0ed97272de22fd1ae65277b4 *man/metric_plot.Rd
c965a45d174e17f7349d3c3d41da2f52 *man/nmf_lbfgsb.Rd
8a1637b8461f5a18c970cffa841a6acc *man/nmf_lbfgsb_hyperOpt.Rd
3a8100b34e12e0b438b0ad0535d6687d *man/nrmse.Rd
e4fd7face8a61629b132585496cf32fc *man/objective_opt.Rd
9e744cdbd1f147e927a83443d23ac750 *man/plot.dicepro.Rd
3f653d0141b84b147b2cb804f9804b63 *man/plot_hyperopt.Rd
ced2d76aec98a3d1e7c49b34c6c93191 *man/research_hyperOpt.Rd
788978a003c0e80d04c2b38121efbab9 *man/row_norm_pos.Rd
0b4685d6138db1058c7572bdc3c71823 *man/run_CSx.Rd
440523ead8ae88646ba9ca9b432747ea *man/run_experiment.Rd
065f378f9a4889fc14f16e2bdc17ab2e *man/running_method.Rd
28b9dcea9fc7cd504574e34db473f3bc *man/samplewise_metrics.Rd
f19ed0cfa1fcbd8706ef77ee33b24100 *man/simulation.Rd
016e802c61c29a53c548b0dc7a7448ce *man/simulation_bluecode.Rd
c89d6b95d18721894ab45341d0fbc7a6 *src/Makevars
edcaf3fe9e5c85c46e9e7c08a407da83 *src/RcppExports.cpp
05baf7a1d9301edded5f209b961cb0c4 *src/compute_grad_eigen.cpp
71f9900aaf29f8a81f2d2a5fa9332c62 *src/compute_obj_term1_eigen_fast.cpp
2950d8e59ca018b7632ef0a21c00fc23 *src/dicepro.cpp
cdd1720a56d79ee88174746d8eb805f5 *tests/testthat.R
7c83d4d5ac0eec3abaad5bdd9675162b *tests/testthat/test_dicepro.R
a6aa14f7075cd2d911470a6fbb50ba4d *vignettes/hyperparameter-space.Rmd
4b0c2c578d93197a6dd1ad9942f12d61 *vignettes/vignette-real-data.Rmd
2c83748f909c4aaeea24c2376eb0b1ad *vignettes/vignette-simulation.Rmd
