# Generated by roxygen2: do not edit by hand

S3method(print,rclade_options)
export(batch_plot)
export(check_monophyly)
export(check_special_monophyly)
export(detect_taxonomy_format)
export(get_supported_extensions)
export(parse_taxonomy)
export(plot_timetree)
export(rclade_logo)
export(rclade_options)
export(read_taxonomy_file)
export(read_tree_auto)
export(run_rclade_cli)
export(run_rclade_selftest)
export(run_rclade_shiny)
export(save_session_info)
export(save_timetree)
export(set_log_enabled)
export(set_log_file)
export(set_log_level)
export(summarize_taxonomy_quality)
export(summarize_taxonomy_quality_with_file)
export(summarize_timetree)
export(theme_timetree)
export(validate_sequence_deep)
export(validate_sequence_file)
export(validate_tree_sequence_match)
importFrom(ggplot2,"%+replace%")
importFrom(ggtree,"%<+%")
importFrom(rlang,.data)
importFrom(stats,complete.cases)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(utils,data)
importFrom(utils,head)
