Package: BayesianDEB
Title: Bayesian Dynamic Energy Budget Modelling
Version: 0.2.1
Date: 2026-06-17
Authors@R: c(
    person("Branimir K.", "Hackenberger",
           email = "branimir@sciom.hr",
           role = c("aut", "cre")),
    person("Tamara", "Djerdj",
           role = "aut"),
    person("Domagoj K.", "Hackenberger",
           role = "aut")
    )
Description: Provides a Bayesian framework for Dynamic Energy Budget (DEB)
    modelling via 'Stan'. Implements the standard DEB model of Kooijman
    (2010, <doi:10.1017/CBO9780511805400>) as a state-space model with
    Hamiltonian Monte Carlo inference (Carpenter et al., 2017,
    <doi:10.18637/jss.v076.i01>). Includes individual-level growth models,
    growth-reproduction models, hierarchical multi-individual models with
    partial pooling, and toxicokinetic-toxicodynamic (TKTD) models for
    ecotoxicology following the DEBtox framework (Jager et al., 2006,
    <doi:10.1007/s10646-006-0060-x>). Supports prior specification from
    biological knowledge, convergence diagnostics (Vehtari et al., 2021,
    <doi:10.1214/20-BA1221>), posterior predictive checks, derived quantity
    estimation, and visualisation via 'ggplot2'.
License: MIT + file LICENSE
URL: https://github.com/sciom/BayesianDEB
BugReports: https://github.com/sciom/BayesianDEB/issues
Encoding: UTF-8
RoxygenNote: 7.3.3
SystemRequirements: CmdStan
        (https://mc-stan.org/users/interfaces/cmdstan)
Depends: R (>= 4.1.0)
Imports: posterior (>= 1.5.0), rlang (>= 1.1.0), cli (>= 3.6.0),
        ggplot2 (>= 3.4.0), bayesplot (>= 1.10.0), deSolve (>= 1.40),
        stats, utils
Suggests: cmdstanr (>= 0.8.0), testthat (>= 3.0.0), loo (>= 2.6.0),
        digest, dplyr (>= 1.1.0), tidyr (>= 1.3.0), gridExtra, knitr,
        rmarkdown, withr
Additional_repositories: https://stan-dev.r-universe.dev
Config/testthat/edition: 3
VignetteBuilder: knitr
LazyData: true
NeedsCompilation: no
Packaged: 2026-06-17 11:39:03 UTC; branimir
Author: Branimir K. Hackenberger [aut, cre],
  Tamara Djerdj [aut],
  Domagoj K. Hackenberger [aut]
Maintainer: Branimir K. Hackenberger <branimir@sciom.hr>
Repository: CRAN
Date/Publication: 2026-06-17 12:40:07 UTC
Built: R 4.5.3; ; 2026-06-22 06:15:51 UTC; windows
