Package: moire
Title: Multiplicity of Infection and Allele Frequency Recovery from
        Noisy Polyallelic Genetics Data
Version: 3.7.0
Authors@R: c(
    person(given = "Maxwell",
           family = "Murphy",
           role = c("aut", "cre"),
           email = "mm@maxmurphy.dev",
           comment = c(ORCID = "0000-0003-0332-4388")),
    person(given = "Bryan",
           family = "Greenhouse",
           role = c("aut", "ths"),
           email = "bryan.greenhouse@ucsf.edu",
           comment = c(ORCID = "0000-0003-0287-9111")))
Description: A Markov Chain Monte Carlo (MCMC) based approach to Bayesian
    estimation of individual level multiplicity of infection, within host
    relatedness, and population allele frequencies from polyallelic genetic
    data. Implements the model described in Murphy and Greenhouse (2024)
    <doi:10.1093/bioinformatics/btae619>.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
LazyDataCompression: bzip2
SystemRequirements: C++17, GNU make
LinkingTo: Rcpp, RcppProgress, RcppParallel, BH
Imports: Rcpp, RcppProgress, RcppParallel, dplyr, tidyr, stats,
        parallel, purrr, rlang, ggplot2
URL: https://github.com/EPPIcenter/moire,
        https://eppicenter.github.io/moire/,
        https://eppicenter.ucsf.edu/resources
BugReports: https://github.com/EPPIcenter/moire/issues
RoxygenNote: 7.3.3
Suggests: knitr, rmarkdown, forcats, testthat (>= 3.0.0), parallelly
VignetteBuilder: knitr
Depends: R (>= 4.1.0)
Config/testthat/edition: 3
NeedsCompilation: yes
Packaged: 2026-09-15 17:53:11 UTC; mmurphy
Author: Maxwell Murphy [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-0332-4388>),
  Bryan Greenhouse [aut, ths] (ORCID:
    <https://orcid.org/0000-0003-0287-9111>)
Maintainer: Maxwell Murphy <mm@maxmurphy.dev>
Repository: CRAN
Date/Publication: 2026-09-26 16:50:02 UTC
Built: R 4.6.1; aarch64-apple-darwin23; 2026-09-26 19:56:49 UTC; unix
Archs: moire.so.dSYM
