Convert Identifiers in Biological Databases
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Documentation for package ‘IDConverter’ version 0.4.0
Help Pages
| build_annotables | Build Gene Annotation Tables from Ensembl BioMart |
| convert_custom | Convert Identifiers with Custom Database |
| convert_hm_genes | Convert Gene IDs between Ensembl and Hugo Symbol System |
| convert_hm_orthologs | Convert Gene IDs Between Human and Mouse via Orthology |
| convert_icgc | Convert ICGC Identifiers |
| convert_pcawg | Convert PCAWG Identifiers |
| convert_tcga | Convert TCGA Identifiers |
| filter_tcga_barcodes | Filter TCGA Replicate Sample Barcodes |
| icgc | ICGC Sample Identifiers |
| load_data | Load Data from Local or Remote Zenodo Repository |
| ls_annotables | List Available Annotation Tables |
| pair_gdc_samples | Pair Tumor-Normal Samples from GDC Manifest |
| parse_gdc_file_uuid | Parse Sample ID from GDC Portal File UUID |
| pcawg_full | PCAWG Full Sample Identifiers |
| pcawg_simple | PCAWG Mutation Related Simplified Sample Identifiers |
| resolve_gene_aliases | Resolve Gene Symbol Aliases |
| tcga | TCGA Case Identifiers |