Clustering High-Throughput Transcriptome Sequencing (HTS) Data

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Documentation for package ‘HTSCluster’ version 2.0.11

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

HTSCluster-package	Clustering high throughput sequencing (HTS) data
emInit	Parameter initialization for a Poisson mixture model.
highDimensionARI	Calculate ARI for high-dimensional data via data splits
HTSCluster	Clustering high throughput sequencing (HTS) data
HTSClusterUsersGuide	View HTSCluster User's Guide
kmeanInit	Parameter initialization for a Poisson mixture model.
logLikePoisMix	Log likelihood calculation for a Poisson mixture model
logLikePoisMixDiff	Log likelihood calculation for a Poisson mixture model
mylogLikePoisMixObs	Log likelihood calculation for a Poisson mixture model
plot.HTSCluster	Visualize results from clustering using a Poisson mixture model
plot.HTSClusterWrapper	Visualize results from clustering using a Poisson mixture model
PoisMixClus	Poisson mixture model estimation and model selection
PoisMixClusWrapper	Poisson mixture model estimation and model selection
PoisMixMean	Calculate the conditional per-cluster mean of each observation
PoisMixSim	Simulate data from a Poisson mixture model
probaPost	Calculate the conditional probability of belonging to each cluster in a Poisson mixture model
probaPostInit	Parameter initialization for a Poisson mixture model.
splitEMInit	Parameter initialization for a Poisson mixture model.
summary.HTSCluster	Summarize results from clustering using a Poisson mixture model
summary.HTSClusterWrapper	Summarize results from clustering using a Poisson mixture model