Hierarchical Models for Parametric and Semi-Parametric Analyses of Semi-Competing Risks Data

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Documentation for package ‘SemiCompRisks’ version 3.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

SemiCompRisks-package	Algorithms for fitting parametric and semi-parametric models to semi-competing risks data / univariate survival data.
BayesID	Old functions
BayesID_AFT	The function to implement Bayesian parametric and semi-parametric analyses for semi-competing risks data in the context of accelerated failure time (AFT) models.
BayesID_HReg	The function to implement Bayesian parametric and semi-parametric analyses for semi-competing risks data in the context of hazard regression (HReg) models.
BayesSurv	Old functions
BayesSurv_AFT	The function to implement Bayesian parametric and semi-parametric analyses for univariate survival data in the context of accelerated failure time (AFT) models.
BayesSurv_HReg	The function to implement Bayesian parametric and semi-parametric regression analyses for univariate time-to-event data in the context of hazard regression (HReg) models.
BMT	Data on 137 Bone Marrow Transplant Patients
CIBMTR	Center for International Blood and Bone Marrow Transplant Research (CIBMTR) data
CIBMTR_Params	Estimates for model parameters from semi-competing risks analysis of the CIBMTR data using Weibull illness-death model.
coef.Bayes_AFT	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
coef.Bayes_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
coef.Freq_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
FreqID	Old functions
FreqID_HReg	The function to fit parametric Weibull models for the frequentist anlaysis of semi-competing risks data.
FreqSurv	Old functions
FreqSurv_HReg	The function to fit parametric Weibull models for the frequentist analysis of univariate survival data.
initiate.startValues	Old functions
initiate.startValues_AFT	The function that initiates starting values for a single chain.
initiate.startValues_HReg	The function that initiates starting values for a single chain.
plot.pred.Bayes_AFT	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
plot.pred.Bayes_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
plot.pred.Freq_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
PPD	Function to predict the joint probability involving two event times in Bayesian illness-death models
predict.Bayes_AFT	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
predict.Bayes_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
predict.Freq_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.Bayes_AFT	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.Bayes_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.Freq_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.summ.Bayes_AFT	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.summ.Bayes_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
print.summ.Freq_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
scrData	A simulated clustered semi-competing risks data set
SemiCompRisks	Algorithms for fitting parametric and semi-parametric models to semi-competing risks data / univariate survival data.
simID	The function that simulates independent/cluster-correlated semi-competing risks data under semi-Markov Weibull/Weibull-MVN models.
simSurv	The function that simulates independent/cluster-correlated right-censored survival data under Weibull/Weibull-Normal model.
summary.Bayes_AFT	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
summary.Bayes_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
summary.Freq_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.
survData	A simulated clustered univariate survival data.
vcov.Freq_HReg	Methods for objects of classes, 'Bayes_HReg'/'Bayes_AFT'/'Freq_HReg'.